X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5298PEGII from Nextal condition G11, pH8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3948.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.8α = 90
b = 60.7β = 103.36
c = 78.86γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315Kirkpatrick-Baez pair of bi-morph mirrors plus channel cut cryogenically cooled monochromator crystal2008-10-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.97SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.52097.40.10412.7423764231292244
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.6494.90.5094.243583

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1AMO (FAD domain), 2BF4 (FMN domain)2.519.862195811561000.225490.222120.28994RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.158
r_dihedral_angle_4_deg19.589
r_dihedral_angle_3_deg18.197
r_dihedral_angle_1_deg5.95
r_angle_refined_deg1.091
r_angle_other_deg0.81
r_symmetry_vdw_other0.235
r_nbd_refined0.201
r_nbd_other0.182
r_nbtor_refined0.179
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.158
r_dihedral_angle_4_deg19.589
r_dihedral_angle_3_deg18.197
r_dihedral_angle_1_deg5.95
r_angle_refined_deg1.091
r_angle_other_deg0.81
r_symmetry_vdw_other0.235
r_nbd_refined0.201
r_nbd_other0.182
r_nbtor_refined0.179
r_symmetry_hbond_refined0.173
r_symmetry_vdw_refined0.154
r_xyhbond_nbd_refined0.132
r_nbtor_other0.085
r_xyhbond_nbd_other0.024
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4769
Nucleic Acid Atoms
Solvent Atoms123
Heterogen Atoms84

Software

Software
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling