X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52950.1M HEPES sodium salt, 2% PEG 400, 2.0 M Ammonium sulfate , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.4249.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.099α = 90
b = 89.099β = 90
c = 31.599γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDMIRROR2007-03-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D0.97869APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.989.0999.60.0680.06825.96457785778-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.931000.5010.5012.74.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.989.09572357232620.2560.2550.279RANDOM49.43
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.611.61-3.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.332
r_dihedral_angle_4_deg22.774
r_dihedral_angle_3_deg20.188
r_dihedral_angle_1_deg8.705
r_angle_refined_deg1.771
r_angle_other_deg0.969
r_scangle_it0.945
r_mcangle_it0.667
r_scbond_it0.511
r_mcbond_it0.375
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.332
r_dihedral_angle_4_deg22.774
r_dihedral_angle_3_deg20.188
r_dihedral_angle_1_deg8.705
r_angle_refined_deg1.771
r_angle_other_deg0.969
r_scangle_it0.945
r_mcangle_it0.667
r_scbond_it0.511
r_mcbond_it0.375
r_chiral_restr0.09
r_mcbond_other0.073
r_bond_refined_d0.019
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1538
Nucleic Acid Atoms
Solvent Atoms5
Heterogen Atoms

Software

Software
Software NamePurpose
SHARPphasing
ARP/wARPmodel building
Omodel building
REFMACrefinement
Blu-Icedata collection
HKL-2000data reduction
HKL-2000data scaling
Cootmodel building