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Structure of uncharacterised protein rbstp2171 from bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.1M HEPES sodium salt, 2% PEG 400, 2.0 M Ammonium sulfate , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.099 α = 90 b = 89.099 β = 90 c = 31.599 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRROR 2007-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97869 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 89.09 99.6 0.068 0.068 25.96 4 5778 5778 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 100 0.501 0.501 2.7 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 89.09 5723 5723 262 0.256 0.255 0.2666 0.279 0.2851 RANDOM 49.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.61 1.61 -3.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.332 r_dihedral_angle_4_deg 22.774 r_dihedral_angle_3_deg 20.188 r_dihedral_angle_1_deg 8.705 r_angle_refined_deg 1.771 r_angle_other_deg 0.969 r_scangle_it 0.945 r_mcangle_it 0.667 r_scbond_it 0.511 r_mcbond_it 0.375
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.332 r_dihedral_angle_4_deg 22.774 r_dihedral_angle_3_deg 20.188 r_dihedral_angle_1_deg 8.705 r_angle_refined_deg 1.771 r_angle_other_deg 0.969 r_scangle_it 0.945 r_mcangle_it 0.667 r_scbond_it 0.511 r_mcbond_it 0.375 r_chiral_restr 0.09 r_mcbond_other 0.073 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1538 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms
Software Software Software Name Purpose SHARP phasing ARP/wARP model building O model building REFMAC refinement Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling Coot model building