☰ Navigation Tabs
CDK-2-Cyclin complex with indazole inhibitor 9 bound at its active site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 14% PEG 4000, 50mM Hepes pH 7.5, 50mM ammonium acetate, 10 mM DTT, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.14 70.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 184.051 α = 90 b = 184.051 β = 90 c = 214.848 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2006-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99.5 0.092 94535
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 20 83276 4169 99.2 0.266 0.266 0.2678 0.283 0.286 RANDOM 53.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 0.49 0.98 -1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.217 r_dihedral_angle_4_deg 17.446 r_dihedral_angle_3_deg 16.031 r_dihedral_angle_1_deg 6.526 r_scangle_it 1.484 r_angle_other_deg 1.231 r_angle_refined_deg 1.155 r_scbond_it 0.933 r_mcangle_it 0.902 r_mcbond_it 0.518
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.217 r_dihedral_angle_4_deg 17.446 r_dihedral_angle_3_deg 16.031 r_dihedral_angle_1_deg 6.526 r_scangle_it 1.484 r_angle_other_deg 1.231 r_angle_refined_deg 1.155 r_scbond_it 0.933 r_mcangle_it 0.902 r_mcbond_it 0.518 r_nbd_refined 0.204 r_symmetry_vdw_other 0.197 r_symmetry_hbond_refined 0.188 r_nbd_other 0.182 r_nbtor_refined 0.179 r_chiral_restr 0.174 r_xyhbond_nbd_refined 0.146 r_symmetry_vdw_refined 0.113 r_nbtor_other 0.088 r_mcbond_other 0.085 r_bond_refined_d 0.008 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8920 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction