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Human ESCRT-0 Core Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 294 14% MPD, 100 mM CaCl2, 0.1 M sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.97 69.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.059 α = 90 b = 78.059 β = 90 c = 152.849 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2008-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 69.5 0.077 23.4 7.5 20041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 0.325 4.2 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.3 44.77 19005 1019 99.24 0.23941 0.23871 0.2416 0.25305 0.2611 RANDOM 52.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 1.29 -2.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_3_deg 16.136 r_dihedral_angle_4_deg 13.944 r_dihedral_angle_1_deg 4.974 r_scangle_it 3.098 r_scbond_it 2.132 r_angle_refined_deg 1.388 r_mcangle_it 1 r_angle_other_deg 0.938 r_mcbond_it 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_3_deg 16.136 r_dihedral_angle_4_deg 13.944 r_dihedral_angle_1_deg 4.974 r_scangle_it 3.098 r_scbond_it 2.132 r_angle_refined_deg 1.388 r_mcangle_it 1 r_angle_other_deg 0.938 r_mcbond_it 0.852 r_symmetry_vdw_refined 0.357 r_symmetry_vdw_other 0.286 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.182 r_mcbond_other 0.173 r_nbtor_refined 0.167 r_nbd_other 0.163 r_symmetry_hbond_refined 0.139 r_nbtor_other 0.086 r_chiral_restr 0.077 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1614 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection XDS data reduction XSCALE data scaling SHARP phasing