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CDK-2 with indazole inhibitor 9 bound at its active site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 14% PEG 4K, 50mM Hepes pH 7.5, 50mM ammonium acetate, 10 mM DTT, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.03 39.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.602 α = 90 b = 71.747 β = 90 c = 71.922 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm Osmic Purple Mirrors 2007-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 20 98.3 0.054 19405
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.99 18.79 19259 985 98.54 0.228 0.227 0.3037 0.244 0.3003 RANDOM 38.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 2.46 -1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.384 r_dihedral_angle_3_deg 13.984 r_dihedral_angle_4_deg 11.58 r_dihedral_angle_1_deg 6.139 r_scangle_it 1.495 r_angle_refined_deg 1.327 r_mcangle_it 0.909 r_scbond_it 0.852 r_mcbond_it 0.529 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.384 r_dihedral_angle_3_deg 13.984 r_dihedral_angle_4_deg 11.58 r_dihedral_angle_1_deg 6.139 r_scangle_it 1.495 r_angle_refined_deg 1.327 r_mcangle_it 0.909 r_scbond_it 0.852 r_mcbond_it 0.529 r_nbtor_refined 0.308 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.18 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.099 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2227 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction