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Structure of HOP TPR2A domain in complex with the non-cognate Hsc70 peptide ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ELR PDB ENTRY 1ELR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 298 TRIS pH 8.5, PEG MME 2000, NiCl2, Xylitol, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.04 39.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.459 α = 90 b = 48.023 β = 91.56 c = 37.896 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRROS 2005-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 94.7 0.074 13.8 2.5 8178 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 81.2 0.239 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ELR 2.05 20 7281 784 96.2 0.183 0.177 0.1873 0.244 0.2455 RANDOM 16.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.28 -0.57 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.277 r_dihedral_angle_4_deg 21.154 r_dihedral_angle_3_deg 14.897 r_dihedral_angle_1_deg 5.392 r_scangle_it 2.543 r_mcangle_it 2.358 r_angle_refined_deg 1.685 r_scbond_it 1.673 r_mcbond_it 1.553 r_angle_other_deg 0.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.277 r_dihedral_angle_4_deg 21.154 r_dihedral_angle_3_deg 14.897 r_dihedral_angle_1_deg 5.392 r_scangle_it 2.543 r_mcangle_it 2.358 r_angle_refined_deg 1.685 r_scbond_it 1.673 r_mcbond_it 1.553 r_angle_other_deg 0.983 r_mcbond_other 0.398 r_chiral_restr 0.1 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1085 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling