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Crystal structure of HCoV-229E X-domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 285.15 20% PEG 8000, 0.1 M TRIS PH 8.5, 5% MPD, temperature 285.15K
Crystal Properties Matthews coefficient Solvent content 1.86 33.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.56 α = 90 b = 65.89 β = 110.07 c = 38.02 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 65.94 96.9 0.052 0.052 9.067 4.2 14479 16.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.78 1.88 89.9 0.155 0.155 4.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 65.94 13620 14478 858 97.1 0.167 0.165 0.205 0.2298 RANDOM 15.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 0.36 -0.07 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.06 r_dihedral_angle_4_deg 22.49 r_dihedral_angle_3_deg 11.931 r_dihedral_angle_1_deg 6.103 r_scangle_it 3.323 r_scbond_it 2.344 r_angle_refined_deg 1.284 r_mcangle_it 1.279 r_mcbond_it 1.106 r_angle_other_deg 0.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.06 r_dihedral_angle_4_deg 22.49 r_dihedral_angle_3_deg 11.931 r_dihedral_angle_1_deg 6.103 r_scangle_it 3.323 r_scbond_it 2.344 r_angle_refined_deg 1.284 r_mcangle_it 1.279 r_mcbond_it 1.106 r_angle_other_deg 0.899 r_symmetry_vdw_refined 0.239 r_mcbond_other 0.213 r_nbd_refined 0.211 r_symmetry_vdw_other 0.201 r_nbtor_refined 0.172 r_nbd_other 0.171 r_symmetry_hbond_refined 0.133 r_xyhbond_nbd_refined 0.121 r_nbtor_other 0.083 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1283 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing