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Crystal structure of 6-phosphogluconolactonase from trypanosoma brucei complexed with citrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J0E PDB ENTRY 2J0E
Crystallization Crystal Properties Matthews coefficient Solvent content 2.42 49.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.46 α = 90 b = 87.21 β = 96.53 c = 64.79 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2006-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 24.58 100 36055 1 26.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.052
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J0E 2 24.58 36055 1798 97.45 0.1977 0.1953 0.1913 0.2436 0.2421 RANDOM 27.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.6311919 -1.55974903 7.16647457 -1.53528267
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 19.121 t_it 1.637 t_angle_deg 1.29 t_nbd 0.054 t_gen_planes 0.018 t_trig_c_planes 0.013 t_bond_d 0.011 t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3945 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms 28
Software Software Software Name Purpose BUSTER-TNT refinement MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling ADSC data collection