X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.55% PEG400, 20% PEG3350, 50MM K2HPO4 PH 4.5, 10MM MGCL2, 1MM INHIBITOR, pH 4.50, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.2445.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.062α = 90
b = 69.608β = 90
c = 72.363γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray180IMAGE PLATERIGAKU RAXIS IV++Blue confocal2003-02-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8350.10734005

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB entry 1LFA232.4323427119691.10.2190.2150.28723.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.14-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.371
r_dihedral_angle_4_deg24.978
r_dihedral_angle_3_deg15.193
r_dihedral_angle_1_deg5.817
r_sphericity_free3.324
r_scangle_it2.449
r_scbond_it2.331
r_rigid_bond_restr2.298
r_sphericity_bonded1.493
r_angle_refined_deg1.363
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.371
r_dihedral_angle_4_deg24.978
r_dihedral_angle_3_deg15.193
r_dihedral_angle_1_deg5.817
r_sphericity_free3.324
r_scangle_it2.449
r_scbond_it2.331
r_rigid_bond_restr2.298
r_sphericity_bonded1.493
r_angle_refined_deg1.363
r_mcangle_it0.955
r_mcbond_it0.613
r_nbtor_refined0.31
r_symmetry_hbond_refined0.237
r_nbd_refined0.216
r_xyhbond_nbd_refined0.204
r_symmetry_vdw_refined0.203
r_chiral_restr0.094
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2938
Nucleic Acid Atoms
Solvent Atoms368
Heterogen Atoms84

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling