X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52950.1 M MES, 0.8 M sodium acetate, 100 mM sodium bicarbonate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.6653.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.45α = 90
b = 78.45β = 90
c = 182.104γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102007-04-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F20.950CHESSF2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.672.25799.30.1080.10823.59.717669718278
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.74960.5380.5381.46.42500

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2A8D2.629.721816192999.510.2160.2150.239RANDOM63.128
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.040.04-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.957
r_dihedral_angle_3_deg19.161
r_dihedral_angle_4_deg18.693
r_dihedral_angle_1_deg7.28
r_scangle_it1.856
r_angle_refined_deg1.457
r_scbond_it1.234
r_mcangle_it1
r_angle_other_deg0.866
r_mcbond_it0.816
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.957
r_dihedral_angle_3_deg19.161
r_dihedral_angle_4_deg18.693
r_dihedral_angle_1_deg7.28
r_scangle_it1.856
r_angle_refined_deg1.457
r_scbond_it1.234
r_mcangle_it1
r_angle_other_deg0.866
r_mcbond_it0.816
r_symmetry_vdw_other0.3
r_nbd_refined0.253
r_nbd_other0.224
r_symmetry_vdw_refined0.216
r_symmetry_hbond_refined0.205
r_nbtor_refined0.203
r_xyhbond_nbd_refined0.161
r_mcbond_other0.099
r_nbtor_other0.096
r_chiral_restr0.071
r_xyhbond_nbd_other0.049
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2890
Nucleic Acid Atoms
Solvent Atoms13
Heterogen Atoms2

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction