3DG1

Segment SSTNVG derived from IAPP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29330% MPD, no buffer, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.4α = 90
b = 4.785β = 115.88
c = 18.594γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2007-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.659097.90.175.52.846046030.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.7197.40.5243.137

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpoly-alanine beta strand1.6618.624594594595.620.2110.2070.244RANDOM19.277
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.05-0.17-0.920.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg75.296
r_dihedral_angle_1_deg4.208
r_dihedral_angle_3_deg2.845
r_mcangle_it2.248
r_mcbond_it1.634
r_scangle_it1.458
r_scbond_it1.451
r_angle_refined_deg1.011
r_angle_other_deg0.455
r_mcbond_other0.361
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg75.296
r_dihedral_angle_1_deg4.208
r_dihedral_angle_3_deg2.845
r_mcangle_it2.248
r_mcbond_it1.634
r_scangle_it1.458
r_scbond_it1.451
r_angle_refined_deg1.011
r_angle_other_deg0.455
r_mcbond_other0.361
r_symmetry_vdw_other0.286
r_nbd_other0.217
r_nbtor_refined0.156
r_symmetry_hbond_refined0.114
r_nbtor_other0.082
r_symmetry_vdw_refined0.076
r_chiral_restr0.057
r_nbd_refined0.016
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms39
Nucleic Acid Atoms
Solvent Atoms2
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction