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Segment SSTNVG derived from IAPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other poly-alanine beta strand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 30% MPD, no buffer, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.4 α = 90 b = 4.785 β = 115.88 c = 18.594 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 90 97.9 0.17 5.5 2.8 460 460 30.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 97.4 0.524 3.1 37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT poly-alanine beta strand 1.66 18.62 459 459 45 95.62 0.211 0.207 0.2187 0.244 0.2595 RANDOM 19.277
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.17 -0.92 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 75.296 r_dihedral_angle_1_deg 4.208 r_dihedral_angle_3_deg 2.845 r_mcangle_it 2.248 r_mcbond_it 1.634 r_scangle_it 1.458 r_scbond_it 1.451 r_angle_refined_deg 1.011 r_angle_other_deg 0.455 r_mcbond_other 0.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 75.296 r_dihedral_angle_1_deg 4.208 r_dihedral_angle_3_deg 2.845 r_mcangle_it 2.248 r_mcbond_it 1.634 r_scangle_it 1.458 r_scbond_it 1.451 r_angle_refined_deg 1.011 r_angle_other_deg 0.455 r_mcbond_other 0.361 r_symmetry_vdw_other 0.286 r_nbd_other 0.217 r_nbtor_refined 0.156 r_symmetry_hbond_refined 0.114 r_nbtor_other 0.082 r_symmetry_vdw_refined 0.076 r_chiral_restr 0.057 r_nbd_refined 0.016 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 39 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction