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Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 291 2.4 M Ammonium sulfate, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.73 28.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.343 α = 90 b = 37.429 β = 108.86 c = 52.198 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.6525 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.98 40 98.3 0.062 20 3.9 60827 59810 1.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.98 1 95.5 0.65 1.9 3.9 2868
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 0.98 30 2 57110 55370 1740 98.48 0.10897 0.1085 0.1109 0.12369 0.1256 RANDOM 6.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.27 0.16 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.748 r_dihedral_angle_4_deg 19.302 r_dihedral_angle_3_deg 11.288 r_sphericity_free 9.189 r_dihedral_angle_1_deg 5.586 r_scangle_it 4.121 r_sphericity_bonded 3.989 r_scbond_it 3.08 r_mcangle_it 2.279 r_mcbond_it 1.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.748 r_dihedral_angle_4_deg 19.302 r_dihedral_angle_3_deg 11.288 r_sphericity_free 9.189 r_dihedral_angle_1_deg 5.586 r_scangle_it 4.121 r_sphericity_bonded 3.989 r_scbond_it 3.08 r_mcangle_it 2.279 r_mcbond_it 1.791 r_angle_refined_deg 1.723 r_rigid_bond_restr 1.343 r_angle_other_deg 0.993 r_mcbond_other 0.648 r_nbd_refined 0.292 r_symmetry_hbond_refined 0.217 r_symmetry_vdw_refined 0.212 r_xyhbond_nbd_refined 0.207 r_nbd_other 0.197 r_symmetry_vdw_other 0.188 r_nbtor_refined 0.186 r_chiral_restr 0.108 r_nbtor_other 0.095 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1097 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing ARP/wARP model building MLPHARE phasing CCP4 phasing Coot model building