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Crystal structure of human chimerin 1 (CHN1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XA6 PDB entries 1XA6, 2OSA experimental model PDB 2OSA PDB entries 1XA6, 2OSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 291 1.4M Ammonium sulfate, 0.1M Glycine, 0.01M Magnesium chloride, 5% MPD, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.32 71.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.187 α = 90 b = 152.187 β = 90 c = 69.529 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.99987 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.7 0.082 15 10.8 29085
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 97.3 0.97 9.2 1359
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entries 1XA6, 2OSA 2.6 28.513 28308 1433 99.546 0.267 0.266 0.205 0.3 0.2144 RANDOM 48.663
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.044 0.022 0.044 -0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.79 r_dihedral_angle_4_deg 21.059 r_dihedral_angle_3_deg 15.03 r_dihedral_angle_1_deg 5.211 r_scangle_it 1.241 r_angle_refined_deg 1.053 r_angle_other_deg 0.815 r_scbond_it 0.792 r_mcangle_it 0.576 r_mcbond_it 0.342
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.79 r_dihedral_angle_4_deg 21.059 r_dihedral_angle_3_deg 15.03 r_dihedral_angle_1_deg 5.211 r_scangle_it 1.241 r_angle_refined_deg 1.053 r_angle_other_deg 0.815 r_scbond_it 0.792 r_mcangle_it 0.576 r_mcbond_it 0.342 r_symmetry_vdw_other 0.227 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.197 r_nbtor_refined 0.179 r_nbd_other 0.173 r_xyhbond_nbd_refined 0.133 r_nbtor_other 0.082 r_symmetry_hbond_refined 0.063 r_chiral_restr 0.057 r_mcbond_other 0.052 r_bond_refined_d 0.012 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3167 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-3000 data reduction