☰ Navigation Tabs
CRYSTAL STRUCTURE OF A FIC DOMAIN CONTAINING SIGNALING PROTEIN (BT_2513) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.71 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 NANODROP, 15.1% 2-methyl-2,4-pentanediol, 0.1M MES pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.99 75.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.725 α = 90 b = 138.725 β = 90 c = 120.723 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-03-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97954, 0.97882 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.71 29.273 99.9 0.155 0.155 4.6 5.6 36830 59.078
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.71 2.78 100 0.97 0.97 0.8 5.7 2706
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.71 29.273 36802 1840 99.89 0.224 0.222 0.248 0.2384 RANDOM 43.724
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 0.54 1.09 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.006 r_dihedral_angle_4_deg 15.212 r_dihedral_angle_3_deg 14.48 r_scangle_it 5.041 r_dihedral_angle_1_deg 4.85 r_scbond_it 3.374 r_mcangle_it 1.869 r_mcbond_it 1.067 r_angle_refined_deg 1.021 r_angle_other_deg 0.808
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.006 r_dihedral_angle_4_deg 15.212 r_dihedral_angle_3_deg 14.48 r_scangle_it 5.041 r_dihedral_angle_1_deg 4.85 r_scbond_it 3.374 r_mcangle_it 1.869 r_mcbond_it 1.067 r_angle_refined_deg 1.021 r_angle_other_deg 0.808 r_symmetry_vdw_other 0.276 r_nbd_refined 0.211 r_mcbond_other 0.201 r_nbtor_refined 0.182 r_symmetry_vdw_refined 0.174 r_nbd_other 0.167 r_xyhbond_nbd_refined 0.164 r_nbtor_other 0.083 r_symmetry_hbond_refined 0.076 r_chiral_restr 0.056 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4221 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing