3CCT

Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8293protein 15-20 mg/ml, Ligand (saturated),PEG 4000, MgCl2 0.2M, Tris-HCL pH8 0.1M, 7-10 days, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2545.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.94α = 90
b = 173.51β = 119.18
c = 76.4γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102003-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13088.60.08511.886863
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.1845.20.2484420

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.123084267847188.690.20.1960.236RANDOM35.169
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.360.57-0.54-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.391
r_scangle_it2.697
r_scbond_it1.527
r_angle_refined_deg1.251
r_mcangle_it1.097
r_angle_other_deg0.771
r_mcbond_it0.57
r_nbd_other0.227
r_nbd_refined0.196
r_symmetry_vdw_other0.191
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.391
r_scangle_it2.697
r_scbond_it1.527
r_angle_refined_deg1.251
r_mcangle_it1.097
r_angle_other_deg0.771
r_mcbond_it0.57
r_nbd_other0.227
r_nbd_refined0.196
r_symmetry_vdw_other0.191
r_symmetry_hbond_refined0.19
r_xyhbond_nbd_refined0.147
r_symmetry_vdw_refined0.12
r_nbtor_other0.081
r_chiral_restr0.064
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12282
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms168

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction