3C8L

Crystal structure of a ftsz-like protein of unknown function (npun_r1471) from nostoc punctiforme pcc 73102 at 1.22 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5277NANODROP, 2.0M (NH4)2SO4, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0540.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.418α = 90
b = 78.628β = 90
c = 75.04γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat collimating mirror, toroid focusing mirror2008-01-12MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.91837, 0.97978, 0.97964SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2244.06598.50.05311.565528-310.538
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.221.2695.50.5181.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.2244.06565514333498.580.1590.1580.184RANDOM11.411
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.26-0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.548
r_dihedral_angle_4_deg14.55
r_dihedral_angle_3_deg9.544
r_sphericity_free6.241
r_dihedral_angle_1_deg3.651
r_sphericity_bonded2.982
r_scangle_it2.952
r_mcangle_it2.253
r_scbond_it2.107
r_angle_refined_deg1.746
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.548
r_dihedral_angle_4_deg14.55
r_dihedral_angle_3_deg9.544
r_sphericity_free6.241
r_dihedral_angle_1_deg3.651
r_sphericity_bonded2.982
r_scangle_it2.952
r_mcangle_it2.253
r_scbond_it2.107
r_angle_refined_deg1.746
r_mcbond_it1.725
r_rigid_bond_restr1.22
r_angle_other_deg1.085
r_mcbond_other0.764
r_symmetry_vdw_other0.232
r_nbd_refined0.207
r_nbd_other0.196
r_nbtor_refined0.161
r_symmetry_vdw_refined0.158
r_symmetry_hbond_refined0.152
r_xyhbond_nbd_refined0.148
r_chiral_restr0.11
r_nbtor_other0.086
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_bond_other_d0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1783
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms44

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
XSCALEdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata reduction
SHELXDphasing
autoSHARPphasing