☰ Navigation Tabs
Crystal structure of the RP2-Arl3 complex bound to GDP-AlF4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KSG 1KSG, 2BX6 experimental model PDB 2BX6 1KSG, 2BX6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 20% PEG 3350, 0.4M potassium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.698 α = 90 b = 77.943 β = 90 c = 97.918 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9763 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 19.73 98.7 0.042 20.03 4.1 44554 44554 5.3 30.076
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 98.5 0.323 5.3 4.1 6262
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KSG, 2BX6 1.9 19.73 42324 2228 100 0.23336 0.23185 0.2304 0.26194 0.2623 RANDOM 30.076
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.13 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.021 r_dihedral_angle_4_deg 20.569 r_dihedral_angle_3_deg 15.355 r_dihedral_angle_1_deg 7.251 r_scangle_it 1.742 r_angle_refined_deg 1.175 r_scbond_it 1.108 r_mcangle_it 0.879 r_mcbond_it 0.528 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.021 r_dihedral_angle_4_deg 20.569 r_dihedral_angle_3_deg 15.355 r_dihedral_angle_1_deg 7.251 r_scangle_it 1.742 r_angle_refined_deg 1.175 r_scbond_it 1.108 r_mcangle_it 0.879 r_mcbond_it 0.528 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.111 r_symmetry_hbond_refined 0.104 r_chiral_restr 0.076 r_metal_ion_refined 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3745 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction XSCALE data scaling MOLREP phasing