3BA2

Cyanide bound Chlorin substituted Myoglobin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42953.1M ammonium sulfate, 100mM Tris HCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.8935.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.123α = 90
b = 30.389β = 106.01
c = 64.499γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++Osmic blue2007-02-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.822.35990.03421.93.441204311926
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.8698.90.137.33.331160

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.822.35120431192457199.010.1810.1790.231RANDOM14.551
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.311
r_dihedral_angle_4_deg19.528
r_dihedral_angle_3_deg14.357
r_dihedral_angle_1_deg4.998
r_scangle_it4.129
r_angle_refined_deg2.873
r_scbond_it2.708
r_mcangle_it1.674
r_mcbond_it0.899
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.311
r_dihedral_angle_4_deg19.528
r_dihedral_angle_3_deg14.357
r_dihedral_angle_1_deg4.998
r_scangle_it4.129
r_angle_refined_deg2.873
r_scbond_it2.708
r_mcangle_it1.674
r_mcbond_it0.899
r_nbtor_refined0.303
r_nbd_refined0.268
r_symmetry_vdw_refined0.203
r_xyhbond_nbd_refined0.182
r_symmetry_hbond_refined0.169
r_chiral_restr0.092
r_bond_refined_d0.016
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1194
Nucleic Acid Atoms
Solvent Atoms109
Heterogen Atoms59

Software

Software
Software NamePurpose
d*TREKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
d*TREKdata reduction