3B8M

Structure of FepE- Bacterial Polysaccharide Co-polymerase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5298Sodium Citrate Na3C6H5O7, pH 7.5, vapor diffusion, temperature 298K, pH 7.50
Crystal Properties
Matthews coefficientSolvent content
4.0973.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 139.726α = 90
b = 139.726β = 90
c = 276.654γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29ANSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75099.10.08710.311.844193
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.892.20.4486.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.746.1339284207292.890.228030.225770.26947RANDOM46.932
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.030.07-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.268
r_dihedral_angle_4_deg21.694
r_dihedral_angle_3_deg19.034
r_dihedral_angle_1_deg5.75
r_scangle_it5.556
r_mcangle_it3.736
r_scbond_it3.351
r_mcbond_it2.167
r_angle_refined_deg1.367
r_nbtor_refined0.329
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.268
r_dihedral_angle_4_deg21.694
r_dihedral_angle_3_deg19.034
r_dihedral_angle_1_deg5.75
r_scangle_it5.556
r_mcangle_it3.736
r_scbond_it3.351
r_mcbond_it2.167
r_angle_refined_deg1.367
r_nbtor_refined0.329
r_nbd_refined0.225
r_symmetry_vdw_refined0.194
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.155
r_chiral_restr0.089
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6133
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms

Software

Software
Software NamePurpose
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction