X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.629315% PEG4000 ,15% Iisopropanol, 0.1M Sodium acetate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.141.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.333α = 90
b = 39.058β = 101.59
c = 49.231γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 2102006-12-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1148.2241000.2940.2434536135361333
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
111.041000.2940.243453613

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4PTI148.2235361349180262496.630.166590.165910.17931RANDOM11.401
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.210.20.02-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg19.288
r_dihedral_angle_3_deg12.008
r_dihedral_angle_4_deg11.142
r_dihedral_angle_1_deg6.022
r_sphericity_bonded1.944
r_sphericity_free1.77
r_scangle_it1.638
r_scbond_it1.398
r_angle_refined_deg1.131
r_rigid_bond_restr1.009
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg19.288
r_dihedral_angle_3_deg12.008
r_dihedral_angle_4_deg11.142
r_dihedral_angle_1_deg6.022
r_sphericity_bonded1.944
r_sphericity_free1.77
r_scangle_it1.638
r_scbond_it1.398
r_angle_refined_deg1.131
r_rigid_bond_restr1.009
r_mcangle_it0.904
r_mcbond_it0.595
r_nbtor_refined0.316
r_nbd_refined0.189
r_symmetry_vdw_refined0.147
r_symmetry_hbond_refined0.123
r_xyhbond_nbd_refined0.087
r_chiral_restr0.081
r_bond_refined_d0.006
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms842
Nucleic Acid Atoms
Solvent Atoms253
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
Cootmodel building
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling