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Structure Determination of EstA from Arthrobacter nitroguajacolicus Rue61a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.2M MGCL2, 0.1M BIS-TRIS PH6.5, 25% W/V PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.6 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 191.246 α = 90 b = 191.246 β = 90 c = 191.246 γ = 90
Symmetry Space Group I 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 19.73 99.8 0.08 8.3 17.2 25288 2 46.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.58 99.8 0.44 1.8 17.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.45 135.23 20988 1133 99.62 0.18097 0.17904 0.1756 0.21639 0.2152 RANDOM 32.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.982 r_dihedral_angle_4_deg 23.716 r_dihedral_angle_3_deg 18.922 r_dihedral_angle_1_deg 6.69 r_scangle_it 6.084 r_scbond_it 3.977 r_mcangle_it 2.347 r_angle_refined_deg 2.05 r_mcbond_it 1.25 r_chiral_restr 0.148
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.982 r_dihedral_angle_4_deg 23.716 r_dihedral_angle_3_deg 18.922 r_dihedral_angle_1_deg 6.69 r_scangle_it 6.084 r_scbond_it 3.977 r_mcangle_it 2.347 r_angle_refined_deg 2.05 r_mcbond_it 1.25 r_chiral_restr 0.148 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2793 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHENIX-ROSETTA phasing