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Structure of Hamp(AF1503)-Tsr fusion - Hamp (A291V) mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZRX PDB ENTRY 3ZRX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 PH 7
Crystal Properties Matthews coefficient Solvent content 4.04 69.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.22 α = 90 b = 80.02 β = 110.78 c = 139.17 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MX-225 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 40 96.1 0.1 9.57 2.6 32412 2 60
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.75 96.2 0.6 2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZRX 2.65 29.48 29577 1553 100 0.2314 0.22874 0.2288 0.28263 0.2813 RANDOM 62.377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.52 -6.39 3.44 -4.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.082 r_dihedral_angle_3_deg 21.935 r_dihedral_angle_4_deg 21.491 r_dihedral_angle_1_deg 6.139 r_scangle_it 5.86 r_scbond_it 3.15 r_angle_refined_deg 1.94 r_mcangle_it 1.678 r_mcbond_it 0.82 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.082 r_dihedral_angle_3_deg 21.935 r_dihedral_angle_4_deg 21.491 r_dihedral_angle_1_deg 6.139 r_scangle_it 5.86 r_scbond_it 3.15 r_angle_refined_deg 1.94 r_mcangle_it 1.678 r_mcbond_it 0.82 r_chiral_restr 0.13 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4436 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing