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Structure of LysB29(Nepsilon omega-carboxyheptadecanoyl) des(B30) Human Insulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EV3 PDB ENTRY 1EV3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100MM HEPES, 300MM NA-CITRATE, 24% 2-PROPANOL PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.14 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.06 α = 90 b = 79.06 β = 90 c = 41.02 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 90.5 0.04 11.3 2.07 22850
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.65 84.8 0.45 1.7 1.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EV3 1.6 21.88 11270 1249 99.2 0.17 0.165 0.1689 0.214 0.2214 RANDOM 33.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.4 -0.7 -1.4 2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.194 r_dihedral_angle_3_deg 13.446 r_dihedral_angle_1_deg 5.977 r_scangle_it 4.603 r_dihedral_angle_4_deg 4.425 r_scbond_it 3.162 r_mcangle_it 2.036 r_angle_refined_deg 1.947 r_mcbond_it 1.23 r_angle_other_deg 1.017
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.194 r_dihedral_angle_3_deg 13.446 r_dihedral_angle_1_deg 5.977 r_scangle_it 4.603 r_dihedral_angle_4_deg 4.425 r_scbond_it 3.162 r_mcangle_it 2.036 r_angle_refined_deg 1.947 r_mcbond_it 1.23 r_angle_other_deg 1.017 r_mcbond_other 0.39 r_chiral_restr 0.133 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 748 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing