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Mycobacterium tuberculosis UvrA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R6F PDB ENTRY 2R6F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.5 M AMMONIUM SULFATE, 0.1 M HEPES PH 7.5, 1 MM YTTRIUM CHLORIDE.
Crystal Properties Matthews coefficient Solvent content 3 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 258.227 α = 90 b = 258.227 β = 90 c = 204.554 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 30 98.9 0.09 8.2 2.4 106710
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.58 100 0.43 2 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2R6F 3.4 30 105162 1058 100 0.27336 0.27286 0.2676 0.32422 0.3226 RANDOM 63.328
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.17 1.09 2.17 -3.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.196 r_dihedral_angle_3_deg 24 r_dihedral_angle_4_deg 19.592 r_dihedral_angle_1_deg 8.185 r_scangle_it 3.614 r_scbond_it 1.954 r_angle_refined_deg 1.761 r_mcangle_it 1.552 r_mcbond_it 0.791 r_chiral_restr 0.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.196 r_dihedral_angle_3_deg 24 r_dihedral_angle_4_deg 19.592 r_dihedral_angle_1_deg 8.185 r_scangle_it 3.614 r_scbond_it 1.954 r_angle_refined_deg 1.761 r_mcangle_it 1.552 r_mcbond_it 0.791 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 39984 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing