3ZNV

Crystal structure of the OTU domain of OTULIN at 1.3 Angstroms.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5100 MM MES/IMIDAZOLE PH 6.5, 30 MM MGCL2, 30 MM CACL2, 10% PEG 4000, 20% GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
2.3247.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.49α = 90
b = 72.01β = 90
c = 94.67γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287CCDADSC QUANTUM 315rMIRROR2011-11-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-1ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.329.2699.80.117.33.9737483
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3299.40.333.33.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE1.329.2869951372099.680.12680.125320.15439RANDOM16.75
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.49-0.630.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.648
r_dihedral_angle_4_deg18.639
r_sphericity_bonded17.856
r_dihedral_angle_3_deg13.352
r_rigid_bond_restr9.723
r_dihedral_angle_1_deg5.676
r_scangle_it4.834
r_scbond_it4.455
r_mcangle_it4.055
r_mcbond_it3.842
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.648
r_dihedral_angle_4_deg18.639
r_sphericity_bonded17.856
r_dihedral_angle_3_deg13.352
r_rigid_bond_restr9.723
r_dihedral_angle_1_deg5.676
r_scangle_it4.834
r_scbond_it4.455
r_mcangle_it4.055
r_mcbond_it3.842
r_mcbond_other3.834
r_angle_refined_deg1.663
r_angle_other_deg0.887
r_xyhbond_nbd_other0.367
r_symmetry_vdw_refined0.33
r_xyhbond_nbd_refined0.294
r_symmetry_vdw_other0.283
r_symmetry_hbond_refined0.144
r_chiral_restr0.105
r_metal_ion_refined0.078
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_sphericity_free
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2168
Nucleic Acid Atoms
Solvent Atoms333
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALEPACKdata scaling
SHELXphasing