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Crystal structure of Podospora anserina GH26-CBM35 beta-(1,4)- mannanase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QHA PDB ENTRIES 2QHA, 2BVT, 2VX4 AND 2WHK experimental model PDB 2BVT PDB ENTRIES 2QHA, 2BVT, 2VX4 AND 2WHK experimental model PDB 2VX4 PDB ENTRIES 2QHA, 2BVT, 2VX4 AND 2WHK experimental model PDB 2WHK PDB ENTRIES 2QHA, 2BVT, 2VX4 AND 2WHK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.1 M TRIS PH 7.0, 0.2 M NACL, 0.8 M POTASSIUM SODIUM TARTRATE, 1 MM HGCL2
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.49 α = 90 b = 97.49 β = 90 c = 268.717 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2012-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 50 99.9 0.08 25.6 11.8 18575 2 85.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 3 100 0.65 4.6 11.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 2QHA, 2BVT, 2VX4 AND 2WHK 2.85 28.3 18483 956 99.97 0.2088 0.2063 0.2027 0.2573 0.2559 RANDOM 68.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.4989 -2.4989 4.9978
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.22 t_omega_torsion 2.63 t_angle_deg 1.04 t_bond_d 0.008 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.22 t_omega_torsion 2.63 t_angle_deg 1.04 t_bond_d 0.008 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3493 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 40
Software Software Software Name Purpose BUSTER refinement XDS data reduction SCALA data scaling AMoRE phasing