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The crystal structure of a Cu(I) metallochaperone from Streptomyces lividans in its apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZJA PDB ENTRY 3ZJA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 31 % PEG 8K, 0.2 M SODIUM ACETATE AND 0.1 M SODIUM CACODYLATE, PH 6.5
Crystal Properties Matthews coefficient Solvent content 1.57 21.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.6 α = 90 b = 47.68 β = 90 c = 48.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2012-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 34.16 98 0.09 8.8 3.9 11478 29.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 89.5 0.44 1.9 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZJA 1.7 34.16 10898 544 97.78 0.18561 0.18323 0.1909 0.23303 0.2321 RANDOM 20.422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -1.34 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.572 r_dihedral_angle_3_deg 15.791 r_dihedral_angle_4_deg 12.686 r_dihedral_angle_1_deg 6.444 r_angle_refined_deg 1.771 r_angle_other_deg 0.809 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_bond_other_d 0.001 r_gen_planes_refined
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.572 r_dihedral_angle_3_deg 15.791 r_dihedral_angle_4_deg 12.686 r_dihedral_angle_1_deg 6.444 r_angle_refined_deg 1.771 r_angle_other_deg 0.809 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 866 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing