3ZGP
NMR structure of the catalytic domain from E. faecium L,D- transpeptidase acylated by ertapenem
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 1H-15N-HSQC | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
2 | 1H-13C-HSQC CENTERED ON ALIPHATICS | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
3 | 1H-15N-HMQC DETECTING 2J | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
4 | 3J COUPLINGS IN HISTIDINES IMIDAZOLE RING | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
5 | HSQC DETECTING 1J COUPLING IN HISTIDINES IMIDAZOLE RING | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
6 | HNCACB | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
7 | HNCO | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
8 | 3D-15N-NOESY-HSQC | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
9 | 3D-13C-NOESY-HSQC CENTERED ON ALIPHATICS | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
10 | 1H-13C- HSQC CENTERED ON AROMATICS | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
11 | 3D-13C-NOESY-HSQC CENTERED ON AROMATICS | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 | ||
12 | 13C-15N-FILTERED NOESY | 10% WATER/90% D2O | 300 mM | 6.4 | 1.0 atm | 298.0 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | Direct Drive | 600 |
2 | Bruker | Direct Drive | 600 |
3 | Agilent | Direct Drive | 600 |
4 | Agilent | Direct Drive | 600 |
5 | Agilent | Direct Drive | 600 |
6 | Agilent | Direct Drive | 800 |
7 | Bruker | AVANCE | 950 |
8 | Agilent | Direct Drive | 800 |
9 | Agilent | Direct Drive | 800 |
NMR Refinement | ||
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Method | Details | Software |
ARIA2.3 | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | TOTAL ENERGY |
Conformers Calculated Total Number | 1700 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | THE 20 NMR STRUCTURES WERE DETERMINED USING TRIPLE- RESONANCE NMR SPECTROSCOPY ON A 13C, 15N-LABELED LDTFM SAMPLE INCUBATED WITH 1 EQUIVALENT OF ERTAPENEM ANTIBIOTIC. THESE STRUCTURES WERE REFINED IN WATER WITHIN CNS ARIA. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN | |
2 | structure solution | UNIO | 10 | |
3 | structure solution | TALOS | ||
4 | structure solution | CcpNmr Analysis | ANALYSIS |