NMR solution structure of the RXLR effector AVR3a11 from Phytophthora Capsici
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 1H-15N HSQC | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 2 | 1H-13C HSQC | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 3 | 1H-15N NOESY | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 4 | 1H-13C NOESY | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 5 | CBCACONH | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 6 | HNCACB | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 7 | CCCONH | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 8 | H(CCO)NH | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 9 | 1H-15N TOCSY | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 10 | AROMATIC 1H-13C TROSY | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| 11 | HBCBCGCDCEHE | 10% WATER/90% D2O, 200 MICROM DSS, 0.02% NAN3 | 150 mM | 8.8 | 1.0 atm | 298.0 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DISTANCE GEOMETRY, SIMULATED ANNEALING | STRUCTURES WERE CALCULATED USING THE SCRIPTS FROM THE RECOORD DATABASE | CNS |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOWEST ENERGY |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (n/a) |
| Additional NMR Experimental Information | |
|---|---|
| Details | NONE |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | 1.3 | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN |
| 2 | structure solution | NMRPipe | ||
| 3 | structure solution | CcpNmr Analysis | ANALYSIS | |
| 4 | structure solution | UNIO | ||
| 5 | structure solution | CYANA | ||
| 6 | structure solution | CNS USING RECOORD SCRIPTS | SCRIPTS | |
