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Crystal structure of PirA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 298 30mM Tris HCl, 100mM NaCl, 1mM DTT, 5% glycerol, 20% PEG 3350, 0.2M KNO3, 15% ethylene glycol, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.16 43.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.397 α = 90 b = 67.338 β = 122.8 c = 53.669 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2014-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13C1 0.976 NSRRC BL13C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 50 99.3 0.023 33.8 4 78940 78388 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.21 96.9 0.242 2.8 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.17 47.1 78862 74525 3862 99.16 0.13275 0.13275 0.1308 0.1287 0.16926 0.1664 RANDOM 18.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.36 0.35 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.32 r_dihedral_angle_4_deg 15.863 r_dihedral_angle_3_deg 10.253 r_scangle_it 7.126 r_dihedral_angle_1_deg 6.245 r_scbond_it 5.206 r_mcangle_it 3.849 r_rigid_bond_restr 3.143 r_mcbond_it 2.956 r_angle_refined_deg 2.465
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.32 r_dihedral_angle_4_deg 15.863 r_dihedral_angle_3_deg 10.253 r_scangle_it 7.126 r_dihedral_angle_1_deg 6.245 r_scbond_it 5.206 r_mcangle_it 3.849 r_rigid_bond_restr 3.143 r_mcbond_it 2.956 r_angle_refined_deg 2.465 r_chiral_restr 0.147 r_bond_refined_d 0.022 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1783 Nucleic Acid Atoms Solvent Atoms 521 Heterogen Atoms 24
Software Software Software Name Purpose Blu-Ice data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling