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C-terminal esterase domain of LC-Est1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.2M Sodium chloride, 0.1M BIS-TRIS, 25% PEG3,350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.98 37.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.861 α = 90 b = 55.446 β = 90 c = 156.275 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2014-05-19 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RAYONIX MX225HE 2014-07-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU 2 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.978769, 0.979101, 0.994813 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.53 78.14 98.5 0.181 14.5 6.5 60179 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.53 50 56727 3030 97.99 0.1924 0.19069 0.1886 0.22481 0.2214 RANDOM 20.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.669 r_dihedral_angle_4_deg 20.109 r_dihedral_angle_3_deg 13.999 r_dihedral_angle_1_deg 6.535 r_scangle_it 5.707 r_scbond_it 3.798 r_mcangle_it 2.563 r_mcbond_it 1.649 r_angle_refined_deg 1.439 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.669 r_dihedral_angle_4_deg 20.109 r_dihedral_angle_3_deg 13.999 r_dihedral_angle_1_deg 6.535 r_scangle_it 5.707 r_scbond_it 3.798 r_mcangle_it 2.563 r_mcbond_it 1.649 r_angle_refined_deg 1.439 r_chiral_restr 0.116 r_gen_planes_refined 0.017 r_bond_refined_d 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2992 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing