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Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 303 0.12M CHES, 0.5M potassium sodium tartrate, 0.1M lithium sulfate, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 303.0K
Crystal Properties Matthews coefficient Solvent content 2.25 45.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.03 α = 90 b = 118.865 β = 90 c = 46.873 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2012-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 95.6 0.07 11.2 3.7 55555
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 90.7 0.384 2.7 2565
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 41.55 55555 2790 95.35 0.1281 0.1255 0.1261 0.1779 0.179 RANDOM 16.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 -0.06 -0.71
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 47.729 r_dihedral_angle_2_deg 37.824 r_dihedral_angle_4_deg 17.994 r_sphericity_bonded 16.998 r_dihedral_angle_3_deg 12.03 r_dihedral_angle_1_deg 7.17 r_rigid_bond_restr 6.158 r_angle_refined_deg 2.216 r_chiral_restr 0.174 r_bond_refined_d 0.024
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 47.729 r_dihedral_angle_2_deg 37.824 r_dihedral_angle_4_deg 17.994 r_sphericity_bonded 16.998 r_dihedral_angle_3_deg 12.03 r_dihedral_angle_1_deg 7.17 r_rigid_bond_restr 6.158 r_angle_refined_deg 2.216 r_chiral_restr 0.174 r_bond_refined_d 0.024 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2163 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 137
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction