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Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with cellobiose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 303 0.14M CHES, 0.5M potassium sodium tartrate, 0.15M lithium sulfate, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 303.0K
Crystal Properties Matthews coefficient Solvent content 2.28 46.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.738 α = 90 b = 119.281 β = 90 c = 46.794 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2014-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 50 99.5 0.055 16.6 6.5 62399
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 94.3 0.376 5.6 2870
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 46.84 62347 3157 99.67 0.1138 0.1118 0.111 0.1516 0.1528 RANDOM 18.578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.36 0.81 -2.18
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 48.175 r_dihedral_angle_2_deg 36.624 r_sphericity_bonded 18.496 r_dihedral_angle_4_deg 18.368 r_dihedral_angle_3_deg 11.687 r_rigid_bond_restr 7.094 r_dihedral_angle_1_deg 7.055 r_angle_refined_deg 2.134 r_chiral_restr 0.192 r_bond_refined_d 0.021
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 48.175 r_dihedral_angle_2_deg 36.624 r_sphericity_bonded 18.496 r_dihedral_angle_4_deg 18.368 r_dihedral_angle_3_deg 11.687 r_rigid_bond_restr 7.094 r_dihedral_angle_1_deg 7.055 r_angle_refined_deg 2.134 r_chiral_restr 0.192 r_bond_refined_d 0.021 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2163 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 87
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction