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Crystal structure of trypanosoma brucei gambiense glycerol kinase in complex with glycerol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20-30% PEG 400, 0.1M HEPES, 0.01M MAGNESIUM SULPHATE, 11% 1,6-HEXANEDIOL , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.58 52.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.485 α = 90 b = 122.139 β = 90.76 c = 154.515 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 50 95.8 0.043 14.6 2.7 84270 80879 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.37 2.44 96 0.474 1.7 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.37 30 84270 80879 4256 90.3 0.19317 0.19003 0.2056 0.25099 0.2627 RANDOM 51.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.45 -4.33 26.08 -18.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.815 r_dihedral_angle_4_deg 21.583 r_dihedral_angle_3_deg 19.47 r_dihedral_angle_1_deg 6.929 r_scangle_it 3.713 r_scbond_it 2.334 r_angle_refined_deg 1.651 r_mcangle_it 1.508 r_mcbond_it 0.815 r_angle_other_deg 0.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.815 r_dihedral_angle_4_deg 21.583 r_dihedral_angle_3_deg 19.47 r_dihedral_angle_1_deg 6.929 r_scangle_it 3.713 r_scbond_it 2.334 r_angle_refined_deg 1.651 r_mcangle_it 1.508 r_mcbond_it 0.815 r_angle_other_deg 0.654 r_chiral_restr 0.113 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15828 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 74
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling