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The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with stearic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 55%(v/v) PEG400, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.557 α = 90 b = 69.418 β = 90 c = 33.812 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2013-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.80000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.88 50 98.6 0.066 12.4 102203 100773 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.88 0.9 87 0.423 2.45 6.6 4408
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 0.88 42.89 95629 95629 5025 98.6 0.1079 0.1079 0.10765 0.1088 0.11267 0.1141 RANDOM 9.508
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.512 r_sphericity_free 18.983 r_dihedral_angle_4_deg 17.043 r_dihedral_angle_3_deg 14.229 r_sphericity_bonded 7.703 r_rigid_bond_restr 7.392 r_dihedral_angle_1_deg 6.13 r_long_range_B_refined 3.541 r_long_range_B_other 3.333 r_scangle_other 3.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.512 r_sphericity_free 18.983 r_dihedral_angle_4_deg 17.043 r_dihedral_angle_3_deg 14.229 r_sphericity_bonded 7.703 r_rigid_bond_restr 7.392 r_dihedral_angle_1_deg 6.13 r_long_range_B_refined 3.541 r_long_range_B_other 3.333 r_scangle_other 3.111 r_scbond_it 2.748 r_scbond_other 2.747 r_angle_refined_deg 2.385 r_mcangle_other 1.856 r_mcangle_it 1.819 r_mcbond_it 1.47 r_mcbond_other 1.342 r_angle_other_deg 1.13 r_chiral_restr 0.121 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1044 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 55
Software Software Software Name Purpose BSS data collection CCP4 model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing