3WR1

Crystal structure of Cormorant (Phalacrocorax carbo) hemoglobin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5289.1525% PEG3350, 500mM NaCl, 10% Glycerol., pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289.15K
Crystal Properties
Matthews coefficientSolvent content
2.1843.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.64α = 90
b = 55.64β = 90
c = 153.381γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateOsmic Confocal MAX-FLUX mirror optics2014-01-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.513.0877.22936
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.513.0877.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1FAW3.513.08265428277.20.195820.187850.26513RANDOM9.442
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.070.13-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.293
r_dihedral_angle_3_deg18.924
r_dihedral_angle_4_deg11.2
r_dihedral_angle_1_deg5.861
r_long_range_B_refined1.535
r_long_range_B_other1.535
r_angle_refined_deg1.25
r_angle_other_deg0.749
r_mcangle_it0.742
r_mcangle_other0.741
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.293
r_dihedral_angle_3_deg18.924
r_dihedral_angle_4_deg11.2
r_dihedral_angle_1_deg5.861
r_long_range_B_refined1.535
r_long_range_B_other1.535
r_angle_refined_deg1.25
r_angle_other_deg0.749
r_mcangle_it0.742
r_mcangle_other0.741
r_scangle_other0.401
r_mcbond_it0.399
r_mcbond_other0.399
r_scbond_it0.197
r_scbond_other0.197
r_chiral_restr0.084
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2217
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms86

Software

Software
Software NamePurpose
MAR345data collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling