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Crystal structure of Cormorant (Phalacrocorax carbo) hemoglobin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FAW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289.15 25% PEG3350, 500mM NaCl, 10% Glycerol., pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289.15K
Crystal Properties Matthews coefficient Solvent content 2.18 43.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.64 α = 90 b = 55.64 β = 90 c = 153.381 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic Confocal MAX-FLUX mirror optics 2014-01-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 13.08 77.2 2936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 13.08 77.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FAW 3.5 13.08 2654 282 77.2 0.19582 0.18785 0.1957 0.26513 0.2703 RANDOM 9.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.07 0.13 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.293 r_dihedral_angle_3_deg 18.924 r_dihedral_angle_4_deg 11.2 r_dihedral_angle_1_deg 5.861 r_long_range_B_refined 1.535 r_long_range_B_other 1.535 r_angle_refined_deg 1.25 r_angle_other_deg 0.749 r_mcangle_it 0.742 r_mcangle_other 0.741
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.293 r_dihedral_angle_3_deg 18.924 r_dihedral_angle_4_deg 11.2 r_dihedral_angle_1_deg 5.861 r_long_range_B_refined 1.535 r_long_range_B_other 1.535 r_angle_refined_deg 1.25 r_angle_other_deg 0.749 r_mcangle_it 0.742 r_mcangle_other 0.741 r_scangle_other 0.401 r_mcbond_it 0.399 r_mcbond_other 0.399 r_scbond_it 0.197 r_scbond_other 0.197 r_chiral_restr 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2217 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 86
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling