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Crystal structure of Hen egg-white lysozyme in pH 4.5 Sodium Acetatewith 1M NaCl at 277K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 277 80mg/ml hen egg-white lysozyme, 100mM Sodium Acetate, 1M NaCl , pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.99 38.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.665 α = 90 b = 78.665 β = 90 c = 36.922 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2013-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 0.97949 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 50 97.7 0.15 0.15 39.755 11.3 228340 228340 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 50 100 0.15 0.15 2.28 11.3 228340
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.46 27.81 20663 19119 1034 97.53 0.176 0.176 0.17307 0.1715 0.23476 0.232 RANDOM 26.186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 13.35 13.35 -26.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.37 r_sphericity_free 24.495 r_dihedral_angle_4_deg 18.557 r_sphericity_bonded 17.816 r_dihedral_angle_3_deg 17.641 r_rigid_bond_restr 16.173 r_dihedral_angle_1_deg 7.63 r_scangle_other 6.38 r_scbond_it 6.205 r_scbond_other 6.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.37 r_sphericity_free 24.495 r_dihedral_angle_4_deg 18.557 r_sphericity_bonded 17.816 r_dihedral_angle_3_deg 17.641 r_rigid_bond_restr 16.173 r_dihedral_angle_1_deg 7.63 r_scangle_other 6.38 r_scbond_it 6.205 r_scbond_other 6.195 r_long_range_B_refined 5.199 r_long_range_B_other 5.161 r_mcangle_other 3.62 r_mcangle_it 3.598 r_mcbond_it 3.485 r_mcbond_other 3.44 r_angle_refined_deg 2.161 r_angle_other_deg 1.144 r_chiral_restr 0.181 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling