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Monoclinic Lysozyme at 0.96 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.7 298 50mM Sodium Acetate pH4.7, 20% Ethylene glycol, 0.4M Sodium nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.79 31.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.353 α = 90 b = 62.563 β = 90.11 c = 60.09 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2013-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.96 30.045 91 0.054 123121 111914
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 0.96 30.045 111914 106293 5621 90.89 0.16138 0.1596 0.1668 0.19532 0.2032 RANDOM 19.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.05 0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.807 r_sphericity_free 27.433 r_dihedral_angle_4_deg 20.45 r_sphericity_bonded 15.776 r_dihedral_angle_3_deg 12.591 r_rigid_bond_restr 9.121 r_dihedral_angle_1_deg 7.928 r_long_range_B_refined 6.158 r_long_range_B_other 5.923 r_scangle_other 5.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.807 r_sphericity_free 27.433 r_dihedral_angle_4_deg 20.45 r_sphericity_bonded 15.776 r_dihedral_angle_3_deg 12.591 r_rigid_bond_restr 9.121 r_dihedral_angle_1_deg 7.928 r_long_range_B_refined 6.158 r_long_range_B_other 5.923 r_scangle_other 5.732 r_scbond_it 5.171 r_scbond_other 5.171 r_mcbond_it 4.307 r_mcbond_other 4.305 r_mcangle_it 4.039 r_mcangle_other 4.037 r_angle_other_deg 2.329 r_angle_refined_deg 1.914 r_chiral_restr 0.138 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_gen_planes_other 0.01 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2000 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms 46
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling