☰ Navigation Tabs
Crystal structure of human c-Met kinase domain with its inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.1M HEPES, 25% PEG2000, 8% isopropanol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.04 39.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.69 α = 90 b = 78.786 β = 90 c = 89.969 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2007-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.000 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 23931
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 20 17015 926 97.84 0.21476 0.21235 0.25895 0.2648 RANDOM 26.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.77 6.35 -2.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.526 r_dihedral_angle_4_deg 15.998 r_dihedral_angle_3_deg 13.166 r_dihedral_angle_1_deg 5.145 r_scangle_it 2.28 r_scbond_it 1.384 r_angle_refined_deg 1.122 r_mcangle_it 1.043 r_angle_other_deg 0.826 r_mcbond_it 0.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.526 r_dihedral_angle_4_deg 15.998 r_dihedral_angle_3_deg 13.166 r_dihedral_angle_1_deg 5.145 r_scangle_it 2.28 r_scbond_it 1.384 r_angle_refined_deg 1.122 r_mcangle_it 1.043 r_angle_other_deg 0.826 r_mcbond_it 0.564 r_mcbond_other 0.094 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2414 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement