☰ Navigation Tabs
Crystal structure of L-amino acid ligase from Bacillus licheniformis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293.15 100mM CaCl2, 24-27%(w/v) PEGMME 550, 4%(v/v) isopropanol in 100mM imidazole, pH 6.5, VAPOR DIFFUSION, temperature 293.15K 2 VAPOR DIFFUSION 6.5 293.15 100mM CaCl2, 24-27%(w/v) PEGMME 550, 4%(v/v) isopropanol in 100 mM imidazole, pH 6.5, VAPOR DIFFUSION, temperature 293.15K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.09 α = 90 b = 90.03 β = 90 c = 154.91 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-09-24 M SINGLE WAVELENGTH 2 2 x-ray 100 PIXEL PSI PILATUS 6M 2008-05-09 M MAD 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA 2 SYNCHROTRON SLS BEAMLINE X06SA 0.97920, 0.97970, 0.97200 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.8 30.01 96.37 0.129 9.7066 5.62 73218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.8 1.9 90.46 5.49 9864
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.46 73160 3625 96.12 0.1981 0.1959 0.1953 0.2407 0.2408 RANDOM 30.789
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -0.65 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.5 r_dihedral_angle_4_deg 15.784 r_dihedral_angle_3_deg 14.587 r_dihedral_angle_1_deg 5.328 r_angle_refined_deg 1.159 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6369 Nucleic Acid Atoms Solvent Atoms 632 Heterogen Atoms 78
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection