3VLN

Human Glutathione Transferase O1-1 C32S Mutant in Complex with Ascorbic Acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.752982.2M ammonium sulfate, 0.1M sodium acetate pH 4.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthew coefficientSolvent content
2.3848.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.918α = 90
b = 56.918β = 90
c = 140.511γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rBEAMLINE OPTICS2009-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX21.0000000Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.749.2999.20.06140.97.22976829768-1-1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7698.70.6964.147.32912

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1EEM1.73028239150799.240.182220.180430.21749RANDOM31.695
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.840.420.84-1.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.095
r_dihedral_angle_4_deg18.39
r_dihedral_angle_3_deg15.153
r_dihedral_angle_1_deg5.808
r_scangle_it4.149
r_scbond_it2.673
r_angle_refined_deg1.86
r_mcangle_it1.701
r_angle_other_deg1.02
r_mcbond_it0.993
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.095
r_dihedral_angle_4_deg18.39
r_dihedral_angle_3_deg15.153
r_dihedral_angle_1_deg5.808
r_scangle_it4.149
r_scbond_it2.673
r_angle_refined_deg1.86
r_mcangle_it1.701
r_angle_other_deg1.02
r_mcbond_it0.993
r_mcbond_other0.306
r_chiral_restr0.111
r_bond_refined_d0.02
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_sphericity_bonded
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_rigid_bond_restr
r_sphericity_free
r_xyhbond_nbd_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1923
Nucleic Acid Atoms
Solvent Atoms205
Heterogen Atoms47

Software

Software
Software NamePurpose
Blu-Icedata collection
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling