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The crystal structure of Arf6-MKLP1 (Mitotic kinesin-like protein 1) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J5X PDB ENTRY 2J5X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 12% PEG 4000, 0.05M ammonium sulfate, 0.005M magnesium chloride, 0.1M sodium cacodylate, 0.25-1.0% v/v ethyl acetate
, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.743 α = 90 b = 174.573 β = 98.74 c = 76.814 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.809 87.286 99.6 29002 28794 1.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.85 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J5X 2.81 30 29002 28749 1461 99.23 0.262 0.2027 0.2012 0.2317 0.2238 RANDOM 55.8034
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -2.09 -1.47 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.153 r_dihedral_angle_4_deg 15.056 r_dihedral_angle_3_deg 13.126 r_dihedral_angle_1_deg 5.394 r_scangle_it 1.38 r_angle_refined_deg 1.061 r_scbond_it 0.792 r_mcangle_it 0.558 r_mcbond_it 0.285 r_chiral_restr 0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.153 r_dihedral_angle_4_deg 15.056 r_dihedral_angle_3_deg 13.126 r_dihedral_angle_1_deg 5.394 r_scangle_it 1.38 r_angle_refined_deg 1.061 r_scbond_it 0.792 r_mcangle_it 0.558 r_mcbond_it 0.285 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8416 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 138
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing