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Cadmium derivative of human LFABP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8 293 30% PEG MME 2000, 0.15M KBr, pH 8.0, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.938 α = 90 b = 57.535 β = 90 c = 72.925 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2009-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 50 99.2 0.053 16.9 13.3 4818 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.57 91.5 0.552 10.9 429
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 8 4520 575 100 0.2395 0.2301 0.2422 0.3098 0.313 RANDOM 59.9325
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.05 -2.44 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.634 r_dihedral_angle_3_deg 18.716 r_dihedral_angle_1_deg 7.139 r_dihedral_angle_4_deg 4.817 r_scangle_it 3.537 r_scbond_it 2.132 r_angle_refined_deg 1.606 r_mcangle_it 1.501 r_mcbond_it 0.812 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.634 r_dihedral_angle_3_deg 18.716 r_dihedral_angle_1_deg 7.139 r_dihedral_angle_4_deg 4.817 r_scangle_it 3.537 r_scbond_it 2.132 r_angle_refined_deg 1.606 r_mcangle_it 1.501 r_mcbond_it 0.812 r_nbtor_refined 0.319 r_symmetry_hbond_refined 0.241 r_nbd_refined 0.232 r_symmetry_vdw_refined 0.219 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 994 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 38
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling