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Crystal structure of Taipoxin beta subunit isoform 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AE7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.05 M Cadmium sulfate, 0.1 M HEPES Sodium salt, 1.0 M Sodium acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.88 57.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.89 α = 90 b = 76.86 β = 90 c = 104.91 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.91232 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 34.97 99.7 0.117 0.117 6.3 3.2 8636 8636 21.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 100 0.443 0.443 1.6 3.3 1239
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AE7 2.15 34.97 8230 8230 406 99.4 0.19156 0.19156 0.18879 0.1935 0.2508 0.2598 RANDOM 25.737
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.1 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.303 r_dihedral_angle_4_deg 18.087 r_dihedral_angle_3_deg 16.138 r_dihedral_angle_1_deg 5.61 r_scangle_it 5.13 r_scbond_it 3.232 r_mcangle_it 1.795 r_angle_refined_deg 1.791 r_mcbond_it 0.982 r_chiral_restr 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.303 r_dihedral_angle_4_deg 18.087 r_dihedral_angle_3_deg 16.138 r_dihedral_angle_1_deg 5.61 r_scangle_it 5.13 r_scbond_it 3.232 r_mcangle_it 1.795 r_angle_refined_deg 1.791 r_mcbond_it 0.982 r_chiral_restr 0.118 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 917 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms
Software Software Software Name Purpose MxCuBE data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling