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Crystal structure of a RNA-binding domain of a poly-U binding splicing factor 60KDa (PUF60) from Homo sapiens at 1.38 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 2.40M ammonium sulfate, 0.1M TRIS pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.21 44.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.433 α = 90 b = 48.974 β = 90 c = 56.298 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2011-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 36.95 95.4 0.102 9.3 6.9 24223 24223 13.374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.45 100 0.011 1.064 0.6 7 3638
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.38 36.95 24119 1213 95.18 0.1444 0.1425 0.1685 0.1813 0.193 RANDOM 18.1125
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.44 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.419 r_sphericity_free 13.874 r_dihedral_angle_3_deg 10.899 r_dihedral_angle_4_deg 8.791 r_sphericity_bonded 6.948 r_scangle_it 5.878 r_dihedral_angle_1_deg 5.369 r_scbond_it 3.915 r_mcangle_it 2.561 r_mcbond_it 1.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.419 r_sphericity_free 13.874 r_dihedral_angle_3_deg 10.899 r_dihedral_angle_4_deg 8.791 r_sphericity_bonded 6.948 r_scangle_it 5.878 r_dihedral_angle_1_deg 5.369 r_scbond_it 3.915 r_mcangle_it 2.561 r_mcbond_it 1.673 r_rigid_bond_restr 1.576 r_angle_refined_deg 1.499 r_angle_other_deg 0.932 r_mcbond_other 0.62 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 923 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 1
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SOLVE phasing SCALA data scaling REFMAC refinement MOSFLM data reduction