☰ Navigation Tabs
Crystal structure of a putative protein binding protein (BACOVA_03105) from Bacteroides ovatus ATCC 8483 at 2.19 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.93 277 0.20 M zinc acetate, 16.40 % polyethylene glycol 8000, 0.1M MES pH 5.93, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.08 60.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.703 α = 90 b = 41.597 β = 92.52 c = 236.878 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing) 2010-11-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.98021,0.97963 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 29.581 93.3 0.035 10.96 29857 -3 56.56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.29 94.2 0.451 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.19 29.581 29857 1508 95.57 0.2184 0.2173 0.2207 0.2397 0.2407 RANDOM 101.8585
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 1.32 -1.12 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.789 r_dihedral_angle_4_deg 11.443 r_torsion_it 9.769 r_dihedral_angle_3_deg 9.205 r_angle_it 5.851 r_bond_it 4.144 r_angle_others 3.749 r_dihedral_angle_1_deg 2.514 r_angle_refined_deg 1.415 r_angle_other_deg 1.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.789 r_dihedral_angle_4_deg 11.443 r_torsion_it 9.769 r_dihedral_angle_3_deg 9.205 r_angle_it 5.851 r_bond_it 4.144 r_angle_others 3.749 r_dihedral_angle_1_deg 2.514 r_angle_refined_deg 1.415 r_angle_other_deg 1.197 r_bond_other 0.963 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3278 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 18
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing XSCALE data scaling REFMAC refinement XDS data reduction SHELXD phasing