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Coccomyxa beta-carbonic anhydrase in complex with thiocyanate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UCJ PDB ENTRY 3UCJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 291 1.6-2.3 M sodium/potassium phosphate, 15 mM thiocyanate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.31 62.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.835 α = 90 b = 76.835 β = 90 c = 222.139 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2000-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9311 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20.046 92.3 0.098 21341 21341
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 98.2 0.449
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UCJ 2.513 20.046 19246 19246 1958 89.85 0.19495 0.19495 0.18948 0.1904 0.24981 0.2515 RANDOM 62.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.94 3.94 -7.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.556 r_dihedral_angle_4_deg 18.509 r_dihedral_angle_3_deg 17.417 r_dihedral_angle_1_deg 6.646 r_scangle_it 4.065 r_scbond_it 2.536 r_angle_refined_deg 1.874 r_mcangle_it 1.541 r_mcbond_it 0.835 r_chiral_restr 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.556 r_dihedral_angle_4_deg 18.509 r_dihedral_angle_3_deg 17.417 r_dihedral_angle_1_deg 6.646 r_scangle_it 4.065 r_scbond_it 2.536 r_angle_refined_deg 1.874 r_mcangle_it 1.541 r_mcbond_it 0.835 r_chiral_restr 0.117 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3390 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing