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Functionally selective inhibition of Group IIA phospholipase A2 reveals a role for vimentin in regulating arachidonic acid metabolism
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 0.1 M Tris HCl pH 7.4, 10 mM CaCl2, 0.5 mM Beta-octyl glucoside and 4 M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.89 57.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.792 α = 90 b = 74.792 β = 90 c = 49.926 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2006-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 1-BM-C 0.90020 APS 1-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.932 97.8 13899 13593 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 24.48 13591 13591 684 97.76 0.1937 0.192 0.1988 0.225 0.2263 RANDOM 39.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.12 -1.56 -3.12 4.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.812 r_dihedral_angle_3_deg 13.67 r_dihedral_angle_4_deg 9.76 r_dihedral_angle_1_deg 5.646 r_scangle_it 3.859 r_scbond_it 2.574 r_mcangle_it 1.354 r_angle_refined_deg 1.103 r_angle_other_deg 0.773 r_mcbond_it 0.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.812 r_dihedral_angle_3_deg 13.67 r_dihedral_angle_4_deg 9.76 r_dihedral_angle_1_deg 5.646 r_scangle_it 3.859 r_scbond_it 2.574 r_mcangle_it 1.354 r_angle_refined_deg 1.103 r_angle_other_deg 0.773 r_mcbond_it 0.744 r_mcbond_other 0.217 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1926 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling PHASER phasing